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using mysql_upgrade with mysqld_multi (no replies)

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I have four instances (5.1.41) running on the same server using mysqld_multi. I stopped the instances and upgraded to 5.5.16 using rpms. When I run mysql_upgrade for each instance it fails to find and upgrade tables with messages like:

ERROR 1016 (HY000) at line 1134: Can't open file: './mysql/proxies_priv.frm' (errno: 24)

I've tried running mysql_upgrade in the datadir - doesn't help. Since mysql_upgrade now ignores the datadir option, how can I point it to the proper folder?

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